Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| SKCM | rs59704451 | chr16:3515148 | C/T | 4.45E-7 | 98 | 14.8 | 19.8 | 8.8 | KM Plot |
| SKCM | rs60068988 | chr5:597668 | T/C | 0 | 98 | 15.02 | 12 | 6.33 | KM Plot |
| SKCM | rs60094497 | chr12:63394838 | T/G | 1.82E-7 | 101 | 15.3 | 14.3 | 8.8 | KM Plot |
| SKCM | rs60623009 | chr2:174740998 | T/C | 3.29E-5 | 100 | 14.85 | 14.2 | 9 | KM Plot |
| SKCM | rs606458 | chr11:64546391 | C/T | 6.62E-7 | 100 | 8.8 | 15.68 | 14.8 | KM Plot |
| SKCM | rs607389 | chr11:64553578 | A/T | 5.64E-7 | 101 | 14.7 | 15.73 | 8.8 | KM Plot |
| SKCM | rs61580655 | chr5:597564 | A/G | 0 | 98 | 15.02 | 12 | 6.33 | KM Plot |
| SKCM | rs620006 | chr11:64530431 | G/A | 5.48E-7 | 101 | 8.8 | 15.63 | 14.8 | KM Plot |
| SKCM | rs633923 | chr11:64542272 | C/A | 6.62E-7 | 100 | 14.73 | 15.73 | 8.8 | KM Plot |
| SKCM | rs637332 | chr11:64528750 | A/G | 5.6E-7 | 101 | 14.67 | 15.73 | 8.8 | KM Plot |
| SKCM | rs6433822 | chr2:180840422 | G/C | 2.92E-5 | 101 | 9 | 13.72 | 15.3 | KM Plot |
| SKCM | rs6480671 | chr10:74900783 | A/G | 0 | 101 | 6.33 | 13.8 | 15.13 | KM Plot |
| SKCM | rs6492983 | chr15:41436049 | T/G | 9.61E-5 | 97 | 12.9 | 19.43 | 15.63 | KM Plot |
| SKCM | rs6555608 | chr5:112712 | A/G | 2.07E-5 | 101 | 9.32 | 15.75 | 14.7 | KM Plot |
| SKCM | rs6580420 | chr5:145799578 | T/C | 0 | 100 | 6.33 | 15.87 | 14.68 | KM Plot |